Search engine for discovering works of Art, research articles, and books related to Art and Culture
ShareThis
Javascript must be enabled to continue!

Draft genome sequence of a predatory bacterium from northern peatland soil

View through CrossRef
Abstract Predatory bacteria are abundant in soil, but their diversity and functions remain not fully understood, especially in subarctic regions. Here, we report strain 1-FT3.2, a predatory bacterium obtained from peatland soil in Northern Finland (Pallas, 68 °N). The bacterium was cultivated on Mucilaginibacter cryoferens FT3.2 as prey. Although a pure culture of strain 1-FT3.2 was not obtained, its draft genome was assembled from sequencing reads derived from the co-culture with its prey. The draft genome of 1-FT3.2 is 7.2 Mb in length and 81% complete. Genome analyses suggested that 1-FT3.2 belongs to the family Polyangiaceae (phylum Myxococcota ), which comprises predatory bacteria. The genome annotation revealed (near-)complete metabolic modules of central carbon metabolism and aerobic respiration. Two proviral regions were predicted in the draft genome, both putatively representing tailed phages of the class Caudoviricetes . Several CRISPR-Cas system proteins were also identified. The draft genome sequence could be used in future comparative studies assessing the diversity of predatory bacteria in northern soils or other environments.
Title: Draft genome sequence of a predatory bacterium from northern peatland soil
Description:
Abstract Predatory bacteria are abundant in soil, but their diversity and functions remain not fully understood, especially in subarctic regions.
Here, we report strain 1-FT3.
2, a predatory bacterium obtained from peatland soil in Northern Finland (Pallas, 68 °N).
The bacterium was cultivated on Mucilaginibacter cryoferens FT3.
2 as prey.
Although a pure culture of strain 1-FT3.
2 was not obtained, its draft genome was assembled from sequencing reads derived from the co-culture with its prey.
The draft genome of 1-FT3.
2 is 7.
2 Mb in length and 81% complete.
Genome analyses suggested that 1-FT3.
2 belongs to the family Polyangiaceae (phylum Myxococcota ), which comprises predatory bacteria.
The genome annotation revealed (near-)complete metabolic modules of central carbon metabolism and aerobic respiration.
Two proviral regions were predicted in the draft genome, both putatively representing tailed phages of the class Caudoviricetes .
Several CRISPR-Cas system proteins were also identified.
The draft genome sequence could be used in future comparative studies assessing the diversity of predatory bacteria in northern soils or other environments.

Related Results

Non-Recommended Publishing Lists: Strategies for Detecting Deceitful Journals
Non-Recommended Publishing Lists: Strategies for Detecting Deceitful Journals
Abstract The rapid growth of open access publishing (OAP) has significantly improved the accessibility and dissemination of scientific knowledge. However, this expansion has also c...
Peatland fire regime across Riau peat hydrological unit, Indonesia
Peatland fire regime across Riau peat hydrological unit, Indonesia
Peatland stretches across approximately 8% of Indonesia’s land area. Peat fire disturbance, which affects the carbon dynamics of the ecosystem, will determine the country's vision ...
Ecological soil physics as section of ecological soil science
Ecological soil physics as section of ecological soil science
Nowadays, there is a general penetration of ecology in other related sciences. Soil science is not an exception. To the evidence of this, the works of soil scientists may serve, th...
Comparison of the planting success and risks of pine weevil damage on mineral soil and drained peatland sites three years after planting
Comparison of the planting success and risks of pine weevil damage on mineral soil and drained peatland sites three years after planting
Over 20% of regeneration operations will be on drained peatland in the next decade in Finland. There are only a few studies comparing the planting success and the risk of pine weev...
Softening the Adjective or Descriptor will not Change the Nature or Threat of “Predatory” Publishing
Softening the Adjective or Descriptor will not Change the Nature or Threat of “Predatory” Publishing
Dear Editor, The issue raised by Tiesenga et al. [1], namely of the nomenclature used to characterize a journal or publisher as “predatory” or otherwise, has been previously debate...
THE INTEGRATED PEATLAND MANAGEMENT SYSTEM (IPMS)
THE INTEGRATED PEATLAND MANAGEMENT SYSTEM (IPMS)
Peatland is a rich ecosystem containing many organic components. This ecosystem is composed of plant residue materials that have not undergone a complete decomposition process due ...
Enhancement of community participation in the peatland restoration in Tanjung leban village, Riau province, Indonesia
Enhancement of community participation in the peatland restoration in Tanjung leban village, Riau province, Indonesia
The peatland restoration required participation from various stakeholders, including the community. In Indonesia, the Peatland Restoration Agency used the social approach to enhanc...
STATUS OF PEATLAND FIRE RESEARCH IN INDONESIA
STATUS OF PEATLAND FIRE RESEARCH IN INDONESIA
Peatland fire research has been on the increasing trend since 1997/1998 when fire episode experienced by Indonesia and ASEAN region. Its impact on transboundary haze pollution has ...

Back to Top