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AMAW: automated gene annotation for non-model eukaryotic genomes
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AbstractSummaryTo support small and large-scale genome annotation projects, we present AMAW (Automated MAKER2 Annotation Wrapper), a program devised to annotate non-model unicellular eukaryotic genomes by automating the acquisition of evidence data (transcripts and proteins) and facilitating the use of MAKER2, a widely adopted software suite for the annotation of eukaryotic genomes. Moreover, AMAW exists as a Singularity container recipe easy to deploy on a grid computer, thereby overcoming the tricky installation of MAKER2.AvailabilityAMAW is released both as a Singularity container recipe and a standalone Perl script (https://bitbucket.org/phylogeno/amaw/).Contactlmeunier@uliege.be or luc.cornet@sciensano.beSupplementary informationSupplementary data are available at Bioinformatics online.
Title: AMAW: automated gene annotation for non-model eukaryotic genomes
Description:
AbstractSummaryTo support small and large-scale genome annotation projects, we present AMAW (Automated MAKER2 Annotation Wrapper), a program devised to annotate non-model unicellular eukaryotic genomes by automating the acquisition of evidence data (transcripts and proteins) and facilitating the use of MAKER2, a widely adopted software suite for the annotation of eukaryotic genomes.
Moreover, AMAW exists as a Singularity container recipe easy to deploy on a grid computer, thereby overcoming the tricky installation of MAKER2.
AvailabilityAMAW is released both as a Singularity container recipe and a standalone Perl script (https://bitbucket.
org/phylogeno/amaw/).
Contactlmeunier@uliege.
be or luc.
cornet@sciensano.
beSupplementary informationSupplementary data are available at Bioinformatics online.
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