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A reference genome sequence resource for the sugar beet root rot pathogen Aphanomyces cochlioides
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ABSTRACT
Aphanomyces cochlioides,
the causal agent of damping-off and root rot of sugar beet (
Beta vulgaris
L.), is a soil-dwelling oomycete responsible for yield losses in all major sugar beet growing regions. Currently, genomic resources for
A. cochlioides
are limited. Here we report a
de novo
genome assembly using a combination of long-read MinION (Oxford Nanopore Technologies) and short-read Illumina sequence data for
A. cochlioides
isolate 103-1, from Breckenridge, MN. The assembled genome was 76.3 Mb, with a contig N50 of 2.6 Mb. The reference assembly was annotated and was composed of 32.1% repetitive elements and 20,274 gene models. This high-quality genome assembly of
A. cochlioides
will be a valuable resource for understanding genetic variation, virulence factors, and comparative genomics of this important sugar beet pathogen.
Title: A reference genome sequence resource for the sugar beet root rot pathogen
Aphanomyces cochlioides
Description:
ABSTRACT
Aphanomyces cochlioides,
the causal agent of damping-off and root rot of sugar beet (
Beta vulgaris
L.
), is a soil-dwelling oomycete responsible for yield losses in all major sugar beet growing regions.
Currently, genomic resources for
A.
cochlioides
are limited.
Here we report a
de novo
genome assembly using a combination of long-read MinION (Oxford Nanopore Technologies) and short-read Illumina sequence data for
A.
cochlioides
isolate 103-1, from Breckenridge, MN.
The assembled genome was 76.
3 Mb, with a contig N50 of 2.
6 Mb.
The reference assembly was annotated and was composed of 32.
1% repetitive elements and 20,274 gene models.
This high-quality genome assembly of
A.
cochlioides
will be a valuable resource for understanding genetic variation, virulence factors, and comparative genomics of this important sugar beet pathogen.
Related Results
DNA-based detection of
Aphanomyces cochlioides
in soil and sugar beet plants
DNA-based detection of
Aphanomyces cochlioides
in soil and sugar beet plants
Abstract
Aphanomyces cochlioides
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Productivity of sugar beet seed plants depending on the quality of mother root crops
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Background: The Health Promotion Levy (HPL) was implemented in South Africa in 2018 as an
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Aphanomyces Root Rot on Sugar Beet
Aphanomyces Root Rot on Sugar Beet
This diagositc guide is on Aphanomyces Root Rot on Sugar Beet, by Aphanomyces cochlioides Drechs. Accepted for publication 18 July 2000. Published 20 July 2000....