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A reference genome sequence resource for the sugar beet root rot pathogen Aphanomyces cochlioides
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ABSTRACT
Aphanomyces cochlioides,
the causal agent of damping-off and root rot of sugar beet (
Beta vulgaris
L.), is a soil-dwelling oomycete responsible for yield losses in all major sugar beet growing regions. Currently, genomic resources for
A. cochlioides
are limited. Here we report a
de novo
genome assembly using a combination of long-read MinION (Oxford Nanopore Technologies) and short-read Illumina sequence data for
A. cochlioides
isolate 103-1, from Breckenridge, MN. The assembled genome was 76.3 Mb, with a contig N50 of 2.6 Mb. The reference assembly was annotated and was composed of 32.1% repetitive elements and 20,274 gene models. This high-quality genome assembly of
A. cochlioides
will be a valuable resource for understanding genetic variation, virulence factors, and comparative genomics of this important sugar beet pathogen.
Title: A reference genome sequence resource for the sugar beet root rot pathogen
Aphanomyces cochlioides
Description:
ABSTRACT
Aphanomyces cochlioides,
the causal agent of damping-off and root rot of sugar beet (
Beta vulgaris
L.
), is a soil-dwelling oomycete responsible for yield losses in all major sugar beet growing regions.
Currently, genomic resources for
A.
cochlioides
are limited.
Here we report a
de novo
genome assembly using a combination of long-read MinION (Oxford Nanopore Technologies) and short-read Illumina sequence data for
A.
cochlioides
isolate 103-1, from Breckenridge, MN.
The assembled genome was 76.
3 Mb, with a contig N50 of 2.
6 Mb.
The reference assembly was annotated and was composed of 32.
1% repetitive elements and 20,274 gene models.
This high-quality genome assembly of
A.
cochlioides
will be a valuable resource for understanding genetic variation, virulence factors, and comparative genomics of this important sugar beet pathogen.
Related Results
DNA-based detection of
Aphanomyces cochlioides
in soil and sugar beet plants
DNA-based detection of
Aphanomyces cochlioides
in soil and sugar beet plants
Abstract
Aphanomyces cochlioides
, the causal agent of seedling damping-off and Aphanomyces root rot (ARR) of sugar beet, cause...
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