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Predicting 90-day survival of patients with COVID-19: Survival of Severely Ill COVID (SOSIC) scores
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Abstract
Background
Predicting outcomes of critically ill intensive care unit (ICU) patients with coronavirus-19 disease (COVID-19) is a major challenge to avoid futile, and prolonged ICU stays.
Methods
The objective was to develop predictive survival models for patients with COVID-19 after 1-to-2 weeks in ICU. Based on the COVID–ICU cohort, which prospectively collected characteristics, management, and outcomes of critically ill patients with COVID-19. Machine learning was used to develop dynamic, clinically useful models able to predict 90-day mortality using ICU data collected on day (D) 1, D7 or D14.
Results
Survival of Severely Ill COVID (SOSIC)-1, SOSIC-7, and SOSIC-14 scores were constructed with 4244, 2877, and 1349 patients, respectively, randomly assigned to development or test datasets. The three models selected 15 ICU-entry variables recorded on D1, D7, or D14. Cardiovascular, renal, and pulmonary functions on prediction D7 or D14 were among the most heavily weighted inputs for both models. For the test dataset, SOSIC-7’s area under the ROC curve was slightly higher (0.80 [0.74–0.86]) than those for SOSIC-1 (0.76 [0.71–0.81]) and SOSIC-14 (0.76 [0.68–0.83]). Similarly, SOSIC-1 and SOSIC-7 had excellent calibration curves, with similar Brier scores for the three models.
Conclusion
The SOSIC scores showed that entering 15 to 27 baseline and dynamic clinical parameters into an automatable XGBoost algorithm can potentially accurately predict the likely 90-day mortality post-ICU admission (sosic.shinyapps.io/shiny). Although external SOSIC-score validation is still needed, it is an additional tool to strengthen decisions about life-sustaining treatments and informing family members of likely prognosis.
Springer Science and Business Media LLC
Matthieu Schmidt
Bertrand Guidet
Alexandre Demoule
Maharajah Ponnaiah
Muriel Fartoukh
Louis Puybasset
Alain Combes
David Hajage
Alain Mercat
Pierre Asfar
François Beloncle
Julien Demiselle
Tài Pham
Arthur Pavot
Xavier Monnet
Christian Richard
Alexandre Demoule
Martin Dres
Julien Mayaux
Alexandra Beurton
Cédric Daubin
Richard Descamps
Aurélie Joret
Damien Du Cheyron
Frédéric Pene
Jean-Daniel Chiche
Mathieu Jozwiak
Paul Jaubert
Guillaume Voiriot
Muriel Fartoukh
Marion Teulier
Clarisse Blayau
Erwen L’Her
Cécile Aubron
Laetitia Bodenes
Nicolas Ferriere
Johann Auchabie
Anthony Le Meur
Sylvain Pignal
Thierry Mazzoni
Jean-Pierre Quenot
Pascal Andreu
Jean-Baptiste Roudau
Marie Labruyère
Saad Nseir
Sébastien Preau
Julien Poissy
Daniel Mathieu
Sarah Benhamida
Rémi Paulet
Nicolas Roucaud
Martial Thyrault
Florence Daviet
Sami Hraiech
Gabriel Parzy
Aude Sylvestre
Sébastien Jochmans
Anne-Laure Bouilland
Mehran Monchi
Marc Danguy des Déserts
Quentin Mathais
Gwendoline Rager
Pierre Pasquier
Reignier Jean
Seguin Amélie
Garret Charlotte
Canet Emmanuel
Jean Dellamonica
Clément Saccheri
Romain Lombardi
Yanis Kouchit
Sophie Jacquier
Armelle Mathonnet
Mai-Ahn Nay
Isabelle Runge
Frédéric Martino
Laure Flurin
Amélie Rolle
Michel Carles
Rémi Coudroy
Arnaud W. Thille
Jean-Pierre Frat
Maeva Rodriguez
Pascal Beuret
Audrey Tientcheu
Arthur Vincent
Florian Michelin
Fabienne Tamion
Dorothée Carpentier
Déborah Boyer
Christophe Girault
Valérie Gissot
Stéphan Ehrmann
Charlotte Salmon Gandonniere
Djlali Elaroussi
Agathe Delbove
Yannick Fedun
Julien Huntzinger
Eddy Lebas
Grâce Kisoka
Céline Grégoire
Stella Marchetta
Bernard Lambermont
Laurent Argaud
Thomas Baudry
Pierre-Jean Bertrand
Auguste Dargent
Christophe Guitton
Nicolas Chudeau
Mickaël Landais
Cédric Darreau
Alexis Ferre
Antoine Gros
Guillaume Lacave
Fabrice Bruneel
Mathilde Neuville
Jérôme Devaquet
Guillaume Tachon
Richard Gallot
Riad Chelha
Arnaud Galbois
Anne Jallot
Ludivine Chalumeau Lemoine
Khaldoun Kuteifan
Valentin Pointurier
Louise-Marie Jandeaux
Joy Mootien
Charles Damoisel
Benjamin Sztrymf
Matthieu Schmidt
Alain Combes
Juliette Chommeloux
Charles-Edouard Luyt
Frédérique Schortgen
Leon Rusel
Camille Jung
Florent Gobert
Damien Vimpere
Lionel Lamhaut
Bertrand Sauneuf
Liliane Charrrier
Julien Calus
Isabelle Desmeules
Benoît Painvin
Jean-Marc Tadie
Vincent Castelain
Baptiste Michard
Jean-Etienne Herbrecht
Mathieu Baldacini
Nicolas Weiss
Sophie Demeret
Clémence Marois
Benjamin Rohaut
Pierre-Henri Moury
Anne-Charlotte Savida
Emmanuel Couadau
Mathieu Série
Nica Alexandru
Cédric Bruel
Candice Fontaine
Sonia Garrigou
Juliette Courtiade Mahler
Maxime Leclerc
Michel Ramakers
Pierre Garçon
Nicole Massou
Ly Van Vong
Juliane Sen
Nolwenn Lucas
Franck Chemouni
Annabelle Stoclin
Alexandre Avenel
Henri Faure
Angélie Gentilhomme
Sylvie Ricome
Paul Abraham
Céline Monard
Julien Textoris
Thomas Rimmele
Florent Montini
Gabriel Lejour
Thierry Lazard
Isabelle Etienney
Younes Kerroumi
Claire Dupuis
Marine Bereiziat
Elisabeth Coupez
François Thouy
Clément Hoffmann
Nicolas Donat
Anne Chrisment
Rose-Marie Blot
Antoine Kimmoun
Audrey Jacquot
Matthieu Mattei
Bruno Levy
Ramin Ravan
Loïc Dopeux
Jean-Mathias Liteaudon
Delphine Roux
Brice Rey
Radu Anghel
Deborah Schenesse
Vincent Gevrey
Jermy Castanera
Philippe Petua
Benjamin Madeux
Otto Hartman
Michael Piagnerelli
Anne Joosten
Cinderella Noel
Patrick Biston
Thibaut Noel
Gurvan Bouar
Messabi Boukhanza
Elsa Demarest
Marie-France Bajolet
Nathanaël Charrier
Audrey Quenet
Cécile Zylberfajn
Nicolas Dufour
Buno Mégarbane
Sqébastian Voicu
Nicolas Deye
Isabelle Malissin
François Legay
Matthieu Debarre
Nicolas Barbarot
Pierre Fillatre
Bertrand Delord
Thomas Laterrade
Tahar Saghi
Wilfried Pujol
Pierre-Julien Cungi
Pierre Esnault
Mickael Cardinale
Vivien Hong Tuan Ha
Grégory Fleury
Marie-Ange Brou
Daniel Zafimahazo
David Tran-Van
Patrick Avargues
Lisa Carenco
Nicolas Robin
Alexandre Ouali
Lucie Houdou
Christophe Le Terrier
Noémie Suh
Steve Primmaz
Jérome Pugin
Emmanuel Weiss
Tobias Gauss
Jean-Denis Moyer
Catherine Paugam Burtz
Béatrice La Combe
Rolland Smonig
Jade Violleau
Pauline Cailliez
Jonathan Chelly
Antoine Marchalot
Cécile Saladin
Christelle Bigot
Pierre-Marie Fayolle
Jules Fatséas
Amr Ibrahim
Dabor Resiere
Rabih Hage
Clémentine Cholet
Marie Cantier
Pierre Trouiler
Philippe Montravers
Brice Lortat-Jacob
Sebastien Tanaka
Alexy Tran Dinh
Jacques Duranteau
Anatole Harrois
Guillaume Dubreuil
Marie Werner
Anne Godier
Sophie Hamada
Diane Zlotnik
Hélène Nougue
Armand Mekontso-Dessap
Guillaume Carteaux
Keyvan Razazi
Nicolas De Prost
Nicolas Mongardon
Olivier Langeron
Eric Levesque
Arié Attias
Charles de Roquetaillade
Benjamin G. Chousterman
Alexandre Mebazaa
Etienne Gayat
Marc Garnier
Emmanuel Pardo
Lea Satre-Buisson
Christophe Gutton
Elise Yvin
Clémence Marcault
Elie Azoulay
Michael Darmon
Hafid Ait Oufella
Geoffroy Hariri
Tomas Urbina
Sandie Mazerand
Nicholas Heming
Francesca Santi
Pierre Moine
Djillali Annane
Adrien Bouglé
Edris Omar
Aymeric Lancelot
Emmanuelle Begot
Gaétan Plantefeve
Damien Contou
Hervé Mentec
Olivier Pajot
Stanislas Faguer
Olivier Cointault
Laurence Lavayssiere
Marie-Béatrice Nogier
Matthieu Jamme
Claire Pichereau
Jan Hayon
Hervé Outin
François Dépret
Maxime Coutrot
Maité Chaussard
Lucie Guillemet
Pierre Goffin
Romain Thouny
Julien Guntz
Laurent Jadot
Romain Persichini
Vanessa Jean-Michel
Hugues Georges
Thomas Caulier
Gaël Pradel
Marie-Hélène Hausermann
Thi My Hue Nguyen-Valat
Michel Boudinaud
Emmanuel Vivier
Sylvène Rosseli
Gaël Bourdin
Christian Pommier
Marc Vinclair
Simon Poignant
Sandrine Mons
Wulfran Bougouin
Franklin Bruna
Quentin Maestraggi
Christian Roth
Laurent Bitker
François Dhelft
Justine Bonnet-Chateau
Mathilde Filippelli
Tristan Morichau-Beauchant
Stéphane Thierry
Charlotte Le Roy
Mélanie Saint Jouan
Bruno Goncalves
Aurélien Mazeraud
Matthieu Daniel
Tarek Sharshar
Cyril Cadoz
Rostane Gaci
Sébastien Gette
Guillaune Louis
Sophe-Caroline Sacleux
Marie-Amélie Ordan
Aurélie Cravoisy
Marie Conrad
Guilhem Courte
Sébastien Gibot
Younès Benzidi
Claudia Casella
Laurent Serpin
Jean-Lou Setti
Marie-Catherine Besse
Anna Bourreau
Jérôme Pillot
Caroline Rivera
Camille Vinclair
Marie-Aline Robaux
Chloé Achino
Marie-Charlotte Delignette
Tessa Mazard
Frédéric Aubrun
Bruno Bouchet
Aurélien Frérou
Laura Muller
Charlotte Quentin
Samuel Degoul
Xavier Stihle
Claude Sumian
Nicoletta Bergero
Bernard Lanaspre
Hervé Quintard
Eve Marie Maiziere
Pierre-Yves Egreteau
Guillaume Leloup
Florin Berteau
Marjolaine Cottrel
Marie Bouteloup
Matthieu Jeannot
Quentin Blanc
Julien Saison
Isabelle Geneau
Romaric Grenot
Abdel Ouchike
Pascal Hazera
Anne-Lyse Masse
Suela Demiri
Corinne Vezinet
Elodie Baron
Deborah Benchetrit
Antoine Monsel
Grégoire Trebbia
Emmanuelle Schaack
Raphaël Lepecq
Mathieu Bobet
Christophe Vinsonneau
Thibault Dekeyser
Quentin Delforge
Imen Rahmani
Bérengère Vivet
Jonathan Paillot
Lucie Hierle
Claire Chaignat
Sarah Valette
Benoït Her
Jennifier Brunet
Mathieu Page
Fabienne Boiste
Anthony Collin
Florent Bavozet
Aude Garin
Mohamed Dlala
Kais Mhamdi
Bassem Beilouny
Alexandra Lavalard
Severine Perez
Benoit Veber
Pierre-Gildas Guitard
Philippe Gouin
Anna Lamacz
Fabienne Plouvier
Bertrand P. Delaborde
Aïssa Kherchache
Amina Chaalal
Jean-Damien Ricard
Marc Amouretti
Santiago Freita-Ramos
Damien Roux
Jean-Michel Constantin
Mona Assefi
Marine Lecore
Agathe Selves
Florian Prevost
Christian Lamer
Ruiying Shi
Lyes Knani
Sébastien Pili Floury
Lucie Vettoretti
Michael Levy
Lucile Marsac
Stéphane Dauger
Sophie Guilmin-Crépon
Hadrien Winiszewski
Gael Piton
Thibaud Soumagne
Gilles Capellier
Jean-Baptiste Putegnat
Frédérique Bayle
Maya Perrou
Ghyslaine Thao
Guillaume Géri
Cyril Charron
Xavier Repessé
Antoine Vieillard-Baron
Mathieu Guilbart
Pierre-Alexandre Roger
Sébastien Hinard
Pierre-Yves Macq
Kevin Chaulier
Sylvie Goutte
Patrick Chillet
Anaïs Pitta
Barbara Darjent
Amandine Bruneau
Sigismond Lasocki
Maxime Leger
Soizic Gergaud
Pierre Lemarie
Nicolas Terzi
Carole Schwebel
Anaïs Dartevel
Louis-Marie Galerneau
Jean-Luc Diehl
Caroline Hauw-Berlemont
Nicolas Péron
Emmanuel Guérot
Abolfazl Mohebbi Amoli
Michel Benhamou
Jean-Pierre Deyme
Olivier Andremont
Diane Lena
Julien Cady
Arnaud Causeret
Arnaud De La Chapelle
Christophe Cracco
Stéphane Rouleau
David Schnell
Camille Foucault
Cécile Lory
Thibault Chapelle
Vincent Bruckert
Julie Garcia
Abdlazize Sahraoui
Nathalie Abbosh
Caroline Bornstain
Pierre Pernet
Florent Poirson
Ahmed Pasem
Philippe Karoubi
Virginie Poupinel
Caroline Gauthier
François Bouniol
Philippe Feuchere
Florent Bavozet
Anne Heron
Serge Carreira
Malo Emery
Anne Sophie Le Floch
Luana Giovannangeli
Nicolas Herzog
Christophe Giacardi
Thibaut Baudic
Chloé Thill
Said Lebbah
Jessica Palmyre
Florence Tubach
David Hajage
Nicolas Bonnet
Nathan Ebstein
Stéphane Gaudry
Yves Cohen
Julie Noublanche
Olivier Lesieur
Arnaud Sément
Isabel Roca-Cerezo
Michel Pascal
Nesrine Sma
Gwenhaël Colin
Jean-Claude Lacherade
Gauthier Bionz
Natacha Maquigneau
Pierre Bouzat
Michel Durand
Marie-Christine Hérault
Jean-Francois Payen
Title: Predicting 90-day survival of patients with COVID-19: Survival of Severely Ill COVID (SOSIC) scores
Description:
Abstract
Background
Predicting outcomes of critically ill intensive care unit (ICU) patients with coronavirus-19 disease (COVID-19) is a major challenge to avoid futile, and prolonged ICU stays.
Methods
The objective was to develop predictive survival models for patients with COVID-19 after 1-to-2 weeks in ICU.
Based on the COVID–ICU cohort, which prospectively collected characteristics, management, and outcomes of critically ill patients with COVID-19.
Machine learning was used to develop dynamic, clinically useful models able to predict 90-day mortality using ICU data collected on day (D) 1, D7 or D14.
Results
Survival of Severely Ill COVID (SOSIC)-1, SOSIC-7, and SOSIC-14 scores were constructed with 4244, 2877, and 1349 patients, respectively, randomly assigned to development or test datasets.
The three models selected 15 ICU-entry variables recorded on D1, D7, or D14.
Cardiovascular, renal, and pulmonary functions on prediction D7 or D14 were among the most heavily weighted inputs for both models.
For the test dataset, SOSIC-7’s area under the ROC curve was slightly higher (0.
80 [0.
74–0.
86]) than those for SOSIC-1 (0.
76 [0.
71–0.
81]) and SOSIC-14 (0.
76 [0.
68–0.
83]).
Similarly, SOSIC-1 and SOSIC-7 had excellent calibration curves, with similar Brier scores for the three models.
Conclusion
The SOSIC scores showed that entering 15 to 27 baseline and dynamic clinical parameters into an automatable XGBoost algorithm can potentially accurately predict the likely 90-day mortality post-ICU admission (sosic.
shinyapps.
io/shiny).
Although external SOSIC-score validation is still needed, it is an additional tool to strengthen decisions about life-sustaining treatments and informing family members of likely prognosis.
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