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Predicting 90-day survival of patients with COVID-19: Survival of Severely Ill COVID (SOSIC) scores

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Abstract Background Predicting outcomes of critically ill intensive care unit (ICU) patients with coronavirus-19 disease (COVID-19) is a major challenge to avoid futile, and prolonged ICU stays. Methods The objective was to develop predictive survival models for patients with COVID-19 after 1-to-2 weeks in ICU. Based on the COVID–ICU cohort, which prospectively collected characteristics, management, and outcomes of critically ill patients with COVID-19. Machine learning was used to develop dynamic, clinically useful models able to predict 90-day mortality using ICU data collected on day (D) 1, D7 or D14. Results Survival of Severely Ill COVID (SOSIC)-1, SOSIC-7, and SOSIC-14 scores were constructed with 4244, 2877, and 1349 patients, respectively, randomly assigned to development or test datasets. The three models selected 15 ICU-entry variables recorded on D1, D7, or D14. Cardiovascular, renal, and pulmonary functions on prediction D7 or D14 were among the most heavily weighted inputs for both models. For the test dataset, SOSIC-7’s area under the ROC curve was slightly higher (0.80 [0.74–0.86]) than those for SOSIC-1 (0.76 [0.71–0.81]) and SOSIC-14 (0.76 [0.68–0.83]). Similarly, SOSIC-1 and SOSIC-7 had excellent calibration curves, with similar Brier scores for the three models. Conclusion The SOSIC scores showed that entering 15 to 27 baseline and dynamic clinical parameters into an automatable XGBoost algorithm can potentially accurately predict the likely 90-day mortality post-ICU admission (sosic.shinyapps.io/shiny). Although external SOSIC-score validation is still needed, it is an additional tool to strengthen decisions about life-sustaining treatments and informing family members of likely prognosis.
Springer Science and Business Media LLC
Matthieu Schmidt Bertrand Guidet Alexandre Demoule Maharajah Ponnaiah Muriel Fartoukh Louis Puybasset Alain Combes David Hajage Alain Mercat Pierre Asfar François Beloncle Julien Demiselle Tài Pham Arthur Pavot Xavier Monnet Christian Richard Alexandre Demoule Martin Dres Julien Mayaux Alexandra Beurton Cédric Daubin Richard Descamps Aurélie Joret Damien Du Cheyron Frédéric Pene Jean-Daniel Chiche Mathieu Jozwiak Paul Jaubert Guillaume Voiriot Muriel Fartoukh Marion Teulier Clarisse Blayau Erwen L’Her Cécile Aubron Laetitia Bodenes Nicolas Ferriere Johann Auchabie Anthony Le Meur Sylvain Pignal Thierry Mazzoni Jean-Pierre Quenot Pascal Andreu Jean-Baptiste Roudau Marie Labruyère Saad Nseir Sébastien Preau Julien Poissy Daniel Mathieu Sarah Benhamida Rémi Paulet Nicolas Roucaud Martial Thyrault Florence Daviet Sami Hraiech Gabriel Parzy Aude Sylvestre Sébastien Jochmans Anne-Laure Bouilland Mehran Monchi Marc Danguy des Déserts Quentin Mathais Gwendoline Rager Pierre Pasquier Reignier Jean Seguin Amélie Garret Charlotte Canet Emmanuel Jean Dellamonica Clément Saccheri Romain Lombardi Yanis Kouchit Sophie Jacquier Armelle Mathonnet Mai-Ahn Nay Isabelle Runge Frédéric Martino Laure Flurin Amélie Rolle Michel Carles Rémi Coudroy Arnaud W. Thille Jean-Pierre Frat Maeva Rodriguez Pascal Beuret Audrey Tientcheu Arthur Vincent Florian Michelin Fabienne Tamion Dorothée Carpentier Déborah Boyer Christophe Girault Valérie Gissot Stéphan Ehrmann Charlotte Salmon Gandonniere Djlali Elaroussi Agathe Delbove Yannick Fedun Julien Huntzinger Eddy Lebas Grâce Kisoka Céline Grégoire Stella Marchetta Bernard Lambermont Laurent Argaud Thomas Baudry Pierre-Jean Bertrand Auguste Dargent Christophe Guitton Nicolas Chudeau Mickaël Landais Cédric Darreau Alexis Ferre Antoine Gros Guillaume Lacave Fabrice Bruneel Mathilde Neuville Jérôme Devaquet Guillaume Tachon Richard Gallot Riad Chelha Arnaud Galbois Anne Jallot Ludivine Chalumeau Lemoine Khaldoun Kuteifan Valentin Pointurier Louise-Marie Jandeaux Joy Mootien Charles Damoisel Benjamin Sztrymf Matthieu Schmidt Alain Combes Juliette Chommeloux Charles-Edouard Luyt Frédérique Schortgen Leon Rusel Camille Jung Florent Gobert Damien Vimpere Lionel Lamhaut Bertrand Sauneuf Liliane Charrrier Julien Calus Isabelle Desmeules Benoît Painvin Jean-Marc Tadie Vincent Castelain Baptiste Michard Jean-Etienne Herbrecht Mathieu Baldacini Nicolas Weiss Sophie Demeret Clémence Marois Benjamin Rohaut Pierre-Henri Moury Anne-Charlotte Savida Emmanuel Couadau Mathieu Série Nica Alexandru Cédric Bruel Candice Fontaine Sonia Garrigou Juliette Courtiade Mahler Maxime Leclerc Michel Ramakers Pierre Garçon Nicole Massou Ly Van Vong Juliane Sen Nolwenn Lucas Franck Chemouni Annabelle Stoclin Alexandre Avenel Henri Faure Angélie Gentilhomme Sylvie Ricome Paul Abraham Céline Monard Julien Textoris Thomas Rimmele Florent Montini Gabriel Lejour Thierry Lazard Isabelle Etienney Younes Kerroumi Claire Dupuis Marine Bereiziat Elisabeth Coupez François Thouy Clément Hoffmann Nicolas Donat Anne Chrisment Rose-Marie Blot Antoine Kimmoun Audrey Jacquot Matthieu Mattei Bruno Levy Ramin Ravan Loïc Dopeux Jean-Mathias Liteaudon Delphine Roux Brice Rey Radu Anghel Deborah Schenesse Vincent Gevrey Jermy Castanera Philippe Petua Benjamin Madeux Otto Hartman Michael Piagnerelli Anne Joosten Cinderella Noel Patrick Biston Thibaut Noel Gurvan Bouar Messabi Boukhanza Elsa Demarest Marie-France Bajolet Nathanaël Charrier Audrey Quenet Cécile Zylberfajn Nicolas Dufour Buno Mégarbane Sqébastian Voicu Nicolas Deye Isabelle Malissin François Legay Matthieu Debarre Nicolas Barbarot Pierre Fillatre Bertrand Delord Thomas Laterrade Tahar Saghi Wilfried Pujol Pierre-Julien Cungi Pierre Esnault Mickael Cardinale Vivien Hong Tuan Ha Grégory Fleury Marie-Ange Brou Daniel Zafimahazo David Tran-Van Patrick Avargues Lisa Carenco Nicolas Robin Alexandre Ouali Lucie Houdou Christophe Le Terrier Noémie Suh Steve Primmaz Jérome Pugin Emmanuel Weiss Tobias Gauss Jean-Denis Moyer Catherine Paugam Burtz Béatrice La Combe Rolland Smonig Jade Violleau Pauline Cailliez Jonathan Chelly Antoine Marchalot Cécile Saladin Christelle Bigot Pierre-Marie Fayolle Jules Fatséas Amr Ibrahim Dabor Resiere Rabih Hage Clémentine Cholet Marie Cantier Pierre Trouiler Philippe Montravers Brice Lortat-Jacob Sebastien Tanaka Alexy Tran Dinh Jacques Duranteau Anatole Harrois Guillaume Dubreuil Marie Werner Anne Godier Sophie Hamada Diane Zlotnik Hélène Nougue Armand Mekontso-Dessap Guillaume Carteaux Keyvan Razazi Nicolas De Prost Nicolas Mongardon Olivier Langeron Eric Levesque Arié Attias Charles de Roquetaillade Benjamin G. Chousterman Alexandre Mebazaa Etienne Gayat Marc Garnier Emmanuel Pardo Lea Satre-Buisson Christophe Gutton Elise Yvin Clémence Marcault Elie Azoulay Michael Darmon Hafid Ait Oufella Geoffroy Hariri Tomas Urbina Sandie Mazerand Nicholas Heming Francesca Santi Pierre Moine Djillali Annane Adrien Bouglé Edris Omar Aymeric Lancelot Emmanuelle Begot Gaétan Plantefeve Damien Contou Hervé Mentec Olivier Pajot Stanislas Faguer Olivier Cointault Laurence Lavayssiere Marie-Béatrice Nogier Matthieu Jamme Claire Pichereau Jan Hayon Hervé Outin François Dépret Maxime Coutrot Maité Chaussard Lucie Guillemet Pierre Goffin Romain Thouny Julien Guntz Laurent Jadot Romain Persichini Vanessa Jean-Michel Hugues Georges Thomas Caulier Gaël Pradel Marie-Hélène Hausermann Thi My Hue Nguyen-Valat Michel Boudinaud Emmanuel Vivier Sylvène Rosseli Gaël Bourdin Christian Pommier Marc Vinclair Simon Poignant Sandrine Mons Wulfran Bougouin Franklin Bruna Quentin Maestraggi Christian Roth Laurent Bitker François Dhelft Justine Bonnet-Chateau Mathilde Filippelli Tristan Morichau-Beauchant Stéphane Thierry Charlotte Le Roy Mélanie Saint Jouan Bruno Goncalves Aurélien Mazeraud Matthieu Daniel Tarek Sharshar Cyril Cadoz Rostane Gaci Sébastien Gette Guillaune Louis Sophe-Caroline Sacleux Marie-Amélie Ordan Aurélie Cravoisy Marie Conrad Guilhem Courte Sébastien Gibot Younès Benzidi Claudia Casella Laurent Serpin Jean-Lou Setti Marie-Catherine Besse Anna Bourreau Jérôme Pillot Caroline Rivera Camille Vinclair Marie-Aline Robaux Chloé Achino Marie-Charlotte Delignette Tessa Mazard Frédéric Aubrun Bruno Bouchet Aurélien Frérou Laura Muller Charlotte Quentin Samuel Degoul Xavier Stihle Claude Sumian Nicoletta Bergero Bernard Lanaspre Hervé Quintard Eve Marie Maiziere Pierre-Yves Egreteau Guillaume Leloup Florin Berteau Marjolaine Cottrel Marie Bouteloup Matthieu Jeannot Quentin Blanc Julien Saison Isabelle Geneau Romaric Grenot Abdel Ouchike Pascal Hazera Anne-Lyse Masse Suela Demiri Corinne Vezinet Elodie Baron Deborah Benchetrit Antoine Monsel Grégoire Trebbia Emmanuelle Schaack Raphaël Lepecq Mathieu Bobet Christophe Vinsonneau Thibault Dekeyser Quentin Delforge Imen Rahmani Bérengère Vivet Jonathan Paillot Lucie Hierle Claire Chaignat Sarah Valette Benoït Her Jennifier Brunet Mathieu Page Fabienne Boiste Anthony Collin Florent Bavozet Aude Garin Mohamed Dlala Kais Mhamdi Bassem Beilouny Alexandra Lavalard Severine Perez Benoit Veber Pierre-Gildas Guitard Philippe Gouin Anna Lamacz Fabienne Plouvier Bertrand P. Delaborde Aïssa Kherchache Amina Chaalal Jean-Damien Ricard Marc Amouretti Santiago Freita-Ramos Damien Roux Jean-Michel Constantin Mona Assefi Marine Lecore Agathe Selves Florian Prevost Christian Lamer Ruiying Shi Lyes Knani Sébastien Pili Floury Lucie Vettoretti Michael Levy Lucile Marsac Stéphane Dauger Sophie Guilmin-Crépon Hadrien Winiszewski Gael Piton Thibaud Soumagne Gilles Capellier Jean-Baptiste Putegnat Frédérique Bayle Maya Perrou Ghyslaine Thao Guillaume Géri Cyril Charron Xavier Repessé Antoine Vieillard-Baron Mathieu Guilbart Pierre-Alexandre Roger Sébastien Hinard Pierre-Yves Macq Kevin Chaulier Sylvie Goutte Patrick Chillet Anaïs Pitta Barbara Darjent Amandine Bruneau Sigismond Lasocki Maxime Leger Soizic Gergaud Pierre Lemarie Nicolas Terzi Carole Schwebel Anaïs Dartevel Louis-Marie Galerneau Jean-Luc Diehl Caroline Hauw-Berlemont Nicolas Péron Emmanuel Guérot Abolfazl Mohebbi Amoli Michel Benhamou Jean-Pierre Deyme Olivier Andremont Diane Lena Julien Cady Arnaud Causeret Arnaud De La Chapelle Christophe Cracco Stéphane Rouleau David Schnell Camille Foucault Cécile Lory Thibault Chapelle Vincent Bruckert Julie Garcia Abdlazize Sahraoui Nathalie Abbosh Caroline Bornstain Pierre Pernet Florent Poirson Ahmed Pasem Philippe Karoubi Virginie Poupinel Caroline Gauthier François Bouniol Philippe Feuchere Florent Bavozet Anne Heron Serge Carreira Malo Emery Anne Sophie Le Floch Luana Giovannangeli Nicolas Herzog Christophe Giacardi Thibaut Baudic Chloé Thill Said Lebbah Jessica Palmyre Florence Tubach David Hajage Nicolas Bonnet Nathan Ebstein Stéphane Gaudry Yves Cohen Julie Noublanche Olivier Lesieur Arnaud Sément Isabel Roca-Cerezo Michel Pascal Nesrine Sma Gwenhaël Colin Jean-Claude Lacherade Gauthier Bionz Natacha Maquigneau Pierre Bouzat Michel Durand Marie-Christine Hérault Jean-Francois Payen
Title: Predicting 90-day survival of patients with COVID-19: Survival of Severely Ill COVID (SOSIC) scores
Description:
Abstract Background Predicting outcomes of critically ill intensive care unit (ICU) patients with coronavirus-19 disease (COVID-19) is a major challenge to avoid futile, and prolonged ICU stays.
Methods The objective was to develop predictive survival models for patients with COVID-19 after 1-to-2 weeks in ICU.
Based on the COVID–ICU cohort, which prospectively collected characteristics, management, and outcomes of critically ill patients with COVID-19.
Machine learning was used to develop dynamic, clinically useful models able to predict 90-day mortality using ICU data collected on day (D) 1, D7 or D14.
Results Survival of Severely Ill COVID (SOSIC)-1, SOSIC-7, and SOSIC-14 scores were constructed with 4244, 2877, and 1349 patients, respectively, randomly assigned to development or test datasets.
The three models selected 15 ICU-entry variables recorded on D1, D7, or D14.
Cardiovascular, renal, and pulmonary functions on prediction D7 or D14 were among the most heavily weighted inputs for both models.
For the test dataset, SOSIC-7’s area under the ROC curve was slightly higher (0.
80 [0.
74–0.
86]) than those for SOSIC-1 (0.
76 [0.
71–0.
81]) and SOSIC-14 (0.
76 [0.
68–0.
83]).
Similarly, SOSIC-1 and SOSIC-7 had excellent calibration curves, with similar Brier scores for the three models.
Conclusion The SOSIC scores showed that entering 15 to 27 baseline and dynamic clinical parameters into an automatable XGBoost algorithm can potentially accurately predict the likely 90-day mortality post-ICU admission (sosic.
shinyapps.
io/shiny).
Although external SOSIC-score validation is still needed, it is an additional tool to strengthen decisions about life-sustaining treatments and informing family members of likely prognosis.

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