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YAMB: metagenome binning using nonlinear dimensionality reduction and density-based clustering
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AbstractSummaryYAMB is a novel metagenome binning tool, which uses tetranucletotide composition and average contig coverage and performs t-SNE dimensionality reduction and sequential DBSCAN data clusterization. YAMB provided with metagenomics assembly and reads may be used for straightforward metagenome binning on a recent personal computer running Linux OS.Availability and ImplementationSource code of YAMB is freely available on GitHub (https://github.com/laxeye/YAMB), implemented in R, Perl and Bash and supported on Linux.ContactKorzhenkov_AA@nrcki.ru
Title: YAMB: metagenome binning using nonlinear dimensionality reduction and density-based clustering
Description:
AbstractSummaryYAMB is a novel metagenome binning tool, which uses tetranucletotide composition and average contig coverage and performs t-SNE dimensionality reduction and sequential DBSCAN data clusterization.
YAMB provided with metagenomics assembly and reads may be used for straightforward metagenome binning on a recent personal computer running Linux OS.
Availability and ImplementationSource code of YAMB is freely available on GitHub (https://github.
com/laxeye/YAMB), implemented in R, Perl and Bash and supported on Linux.
ContactKorzhenkov_AA@nrcki.
ru.
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