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Expert Panel Curation of 31 Genes in Relation to Limb Girdle Muscular Dystrophy
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Introduction Limb girdle muscular dystrophies (LGMDs) are a group of genetically heterogeneous autosomal conditions with some degree of phenotypic homogeneity. LGMD is defined as having onset >2 years of age with progressive proximal weakness, elevated serum creatine kinase levels and dystrophic features on muscle biopsy. Advances in massively parallel sequencing have led to a surge in genes linked to LGMD. Methods The ClinGen Muscular Dystrophies and Myopathies gene curation expert panel (MDM GCEP, formerly Limb Girdle Muscular Dystrophy GCEP) convened to evaluate the strength of evidence supporting gene-disease relationships (GDR) using the ClinGen gene-disease clinical validity framework to evaluate 31 genes implicated in LGMD. Results The GDR was exclusively LGMD for 17 genes, whereas an additional 14 genes were related to a broader phenotype encompassing congenital weakness. Four genes (CAPN3, COL6A1, COL6A2, COL6A3) were split into two separate disease entities, based on each displaying both dominant and recessive inheritance patterns, resulting in curation of 35 GDRs. Of these, 30 (86%) were classified as Definitive, 4 (11%) as Moderate and 1 (3%) as Limited. Two genes, POMGNT1 and DAG1, though definitively related to myopathy, currently have insufficient evidence to support a relationship specifically with LGMD. Conclusions The expert-reviewed assertions on the clinical validity of genes implicated in LGMDs form an invaluable resource for clinicians and molecular geneticists. We encourage the global neuromuscular community to publish case-level data that help clarify disputed or novel LGMD associations.
openRxiv
Shruthi Mohan
Shannon McNulty
Courtney Thaxton
Marwa Elnagheeb
Emma Owens
May Flowers
Teagan Nunnery
Autumn Self
Brooke Palus
Svetlana Gorokhova
April Kennedy
Zhiyv Niu
Mridul Johari
Alassane Baneye Maiga
Kelly Macalalad
Amanda R Clause
Jacques S Beckmann
Lucas Bronicki
Sandra T Cooper
Vijay S Ganesh
Peter B Kang
Akanchha Kesari
Monkol Lek
Jennifer Levy
Laura Rufibach
Marco Savarese
Melissa J Spencer
Volker Straub
Giorgio Tasca
Conrad C Weihl
Title: Expert Panel Curation of 31 Genes in Relation to Limb Girdle Muscular Dystrophy
Description:
Introduction Limb girdle muscular dystrophies (LGMDs) are a group of genetically heterogeneous autosomal conditions with some degree of phenotypic homogeneity.
LGMD is defined as having onset >2 years of age with progressive proximal weakness, elevated serum creatine kinase levels and dystrophic features on muscle biopsy.
Advances in massively parallel sequencing have led to a surge in genes linked to LGMD.
Methods The ClinGen Muscular Dystrophies and Myopathies gene curation expert panel (MDM GCEP, formerly Limb Girdle Muscular Dystrophy GCEP) convened to evaluate the strength of evidence supporting gene-disease relationships (GDR) using the ClinGen gene-disease clinical validity framework to evaluate 31 genes implicated in LGMD.
Results The GDR was exclusively LGMD for 17 genes, whereas an additional 14 genes were related to a broader phenotype encompassing congenital weakness.
Four genes (CAPN3, COL6A1, COL6A2, COL6A3) were split into two separate disease entities, based on each displaying both dominant and recessive inheritance patterns, resulting in curation of 35 GDRs.
Of these, 30 (86%) were classified as Definitive, 4 (11%) as Moderate and 1 (3%) as Limited.
Two genes, POMGNT1 and DAG1, though definitively related to myopathy, currently have insufficient evidence to support a relationship specifically with LGMD.
Conclusions The expert-reviewed assertions on the clinical validity of genes implicated in LGMDs form an invaluable resource for clinicians and molecular geneticists.
We encourage the global neuromuscular community to publish case-level data that help clarify disputed or novel LGMD associations.
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