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Complete Mitochondrial Genome and its Phylogenetic Analysis of Gastrophysa atrocyanea (Coleoptera: Chrysomelidae)
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Gastrophysa atrocyanea, it has good control over common Polygonaceae
weeds in farmland, such as Rumex dentatus. With the advancement of
sequencing technology, mitochondrial genome sequence analysis has become
an essential tool in phylogenetic research. This study aimed to
determine the mitochondrial genome of G. atrocyanea and compare the
characteristics of mitochondrial genomes among 25 insects within the
Chrysomelidae family to explore its phylogenetic status and evolutionary
relationships within the family. The mitochondrial genome of G.
atrocyanea is 17,150bp in length, comprising 22 transfer RNAs, 2
ribosomal RNAs, 13 protein-coding genes (PCGs), and a typical A+T-rich
region found in other Coleoptera mitochondrial genomes. Among these, 4
of the 13 PCGs are encoded on the N strand, while the remaining 9 genes
are encoded on the J strand. The start codon for ND1 is TTG, for ND2,
COII, ATP8, ND3, ND5, and ND6 it is ATT. The start codons for ATP6,
COIII, ND4, ND4L, and CYTB are ATT. Among these 13 PCGs, the termination
codons for ND2, ND4L, ND6, COIII, ATP6, and ATP8 are TAA, the
termination codons for ND3, CYTB, and ND1 are TAG, while the remaining
four PCGs use a single T residue as the termination codon. All tRNAs
exhibit typical cloverleaf structures except for tRNASer1. The complete
mitochondrial genome of G. atrocyanea was first obtained successfully,
which is 17,150 bp in length. It comprises 37 genes and an A+T-rich
region, following the ancestral gene arrangement of all arthropods.
Phylogenetic analysis showed that Gastrophysa polygoni and G. atrocyanea
clustered together with high node support. Additionally, G. atrocyanea
clustered with Altica, Chaetocnema, Argopistes, Galerucella, Diabrotica,
Gastrolina, and Monolepta, forming a highly supported clade. In the ML
analysis, the node support for clusters such as Chaetocnema with
Argopistes, Diabrotica with (Gastrolina+Monolepta), and Gastrolina with
Monolepta was not high.
Title: Complete Mitochondrial Genome and its Phylogenetic Analysis of Gastrophysa atrocyanea (Coleoptera: Chrysomelidae)
Description:
Gastrophysa atrocyanea, it has good control over common Polygonaceae
weeds in farmland, such as Rumex dentatus.
With the advancement of
sequencing technology, mitochondrial genome sequence analysis has become
an essential tool in phylogenetic research.
This study aimed to
determine the mitochondrial genome of G.
atrocyanea and compare the
characteristics of mitochondrial genomes among 25 insects within the
Chrysomelidae family to explore its phylogenetic status and evolutionary
relationships within the family.
The mitochondrial genome of G.
atrocyanea is 17,150bp in length, comprising 22 transfer RNAs, 2
ribosomal RNAs, 13 protein-coding genes (PCGs), and a typical A+T-rich
region found in other Coleoptera mitochondrial genomes.
Among these, 4
of the 13 PCGs are encoded on the N strand, while the remaining 9 genes
are encoded on the J strand.
The start codon for ND1 is TTG, for ND2,
COII, ATP8, ND3, ND5, and ND6 it is ATT.
The start codons for ATP6,
COIII, ND4, ND4L, and CYTB are ATT.
Among these 13 PCGs, the termination
codons for ND2, ND4L, ND6, COIII, ATP6, and ATP8 are TAA, the
termination codons for ND3, CYTB, and ND1 are TAG, while the remaining
four PCGs use a single T residue as the termination codon.
All tRNAs
exhibit typical cloverleaf structures except for tRNASer1.
The complete
mitochondrial genome of G.
atrocyanea was first obtained successfully,
which is 17,150 bp in length.
It comprises 37 genes and an A+T-rich
region, following the ancestral gene arrangement of all arthropods.
Phylogenetic analysis showed that Gastrophysa polygoni and G.
atrocyanea
clustered together with high node support.
Additionally, G.
atrocyanea
clustered with Altica, Chaetocnema, Argopistes, Galerucella, Diabrotica,
Gastrolina, and Monolepta, forming a highly supported clade.
In the ML
analysis, the node support for clusters such as Chaetocnema with
Argopistes, Diabrotica with (Gastrolina+Monolepta), and Gastrolina with
Monolepta was not high.
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