FIB-SEM Study of Archaeological Human Petrous Bones: 3D Structures and Diagenesis

The petrous bone generally preserves ancient DNA better than other fossil bones. One reason for this is that the inner layer of the petrous bone of pigs and humans contains about three times as many osteocytes as other bones, and hence more DNA. A FIB-SEM study of modern pig petrous bones showed that the 3D structure of the thin inner layer is typical of woven bone that forms in the fetus, whereas the thicker outer layer has a lamellar structure. The lamellar structure is common in mammalian bones. Here we study human petrous bones that are about 2500 years old, obtained from three Phoenician sites in Sicily, Italy. A detailed FIB-SEM study of two of these bones, one well preserved and the other poorly preserved, shows that the 3D bone type structure of the human petrous inner layer is woven bone, and the outer layer is lamellar bone. These are the same bone type structures found in pig petrous bones. Furthermore, by comparing nine differently preserved petrous bones from the same archaeological region and age, we show that their collagen contents vary widely, implying that organic material can be significantly altered during diagenesis. The mineral crystals are better preserved and hence less crystalline in the inner layers compared to the outer layers. We therefore infer that the best-preserved DNA in fossil petrous bones should be found in the thin inner layers immediately adjacent to the otic cavity where much more DNA is initially present and the mineral phase tends to be better preserved.