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Panache: a Web Browser-Based Viewer for Linearized Pangenomes
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AbstractMotivationPangenomics evolved since its first applications on bacteria, extending from the study of genes for a given population to the study of all of its sequences available. While multiple methods are being developed to construct pangenomes in eukaryotic species there is still a gap for efficient and user-friendly visualization tools. Emerging graph representations comes with their own challenges, and linearity remains a suitable option for user-friendliness.ResultsWe introduce Panache, a tool for the visualization and exploration of linear representations of gene-based and sequence-based pangenomes. It uses a layout similar to genome browsers to display presence absence variations and additional tracks along a linear axis with a pangenomics perspective.AvailabilityPanache is available at github.com/SouthGreenPlatform/panache under the MIT License.Contacteloi.durant@ird.fr,m.rouard@cgiar.org
Title: Panache: a Web Browser-Based Viewer for Linearized Pangenomes
Description:
AbstractMotivationPangenomics evolved since its first applications on bacteria, extending from the study of genes for a given population to the study of all of its sequences available.
While multiple methods are being developed to construct pangenomes in eukaryotic species there is still a gap for efficient and user-friendly visualization tools.
Emerging graph representations comes with their own challenges, and linearity remains a suitable option for user-friendliness.
ResultsWe introduce Panache, a tool for the visualization and exploration of linear representations of gene-based and sequence-based pangenomes.
It uses a layout similar to genome browsers to display presence absence variations and additional tracks along a linear axis with a pangenomics perspective.
AvailabilityPanache is available at github.
com/SouthGreenPlatform/panache under the MIT License.
Contacteloi.
durant@ird.
fr,m.
rouard@cgiar.
org.
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