Javascript must be enabled to continue!
Improving metadata compliance and interoperability at EGA with Biovalidator
View through CrossRef
The
European Genome-phenome Archive
(EGA), an ELIXIR Core Data Resource, has improved its metadata model for better compliance, flexibility, and interoperability in accordance with the FAIR principles. This model encompasses a diverse spectrum of metadata, including human clinical and sequencing experimental metadata, and its validation rules reside within a set of JSON schema files. In order to apply these schemas during validation, EGA utilizes the ELIXIR Biovalidator, ensuring adherence to community standards and best practices.
This poster presents the
advantages of Biovalidator-based validation in combination with EGA's improved metadata model
. We showcase the ease of maintenance of the schemas through custom rules based on ontology terms, and discuss EGA's infrastructure in development for metadata validation, including a pre-submission toolkit and public servers for remote validation.
Soon, the improved metadata model and Biovalidator will be adopted into EGA's production services, enhancing the metadata FAIRness, while also benefiting the Federated EGA (FEGA) initiative, by providing to emerging nodes an out-of-the-box workflow for metadata validation. The EGA aims to establish a process for constant review and incorporation of feedback into its model through collaboration with ELIXIR Human Data Communities.
F1000 Research Ltd
Title: Improving metadata compliance and interoperability at EGA with Biovalidator
Description:
The
European Genome-phenome Archive
(EGA), an ELIXIR Core Data Resource, has improved its metadata model for better compliance, flexibility, and interoperability in accordance with the FAIR principles.
This model encompasses a diverse spectrum of metadata, including human clinical and sequencing experimental metadata, and its validation rules reside within a set of JSON schema files.
In order to apply these schemas during validation, EGA utilizes the ELIXIR Biovalidator, ensuring adherence to community standards and best practices.
This poster presents the
advantages of Biovalidator-based validation in combination with EGA's improved metadata model
.
We showcase the ease of maintenance of the schemas through custom rules based on ontology terms, and discuss EGA's infrastructure in development for metadata validation, including a pre-submission toolkit and public servers for remote validation.
Soon, the improved metadata model and Biovalidator will be adopted into EGA's production services, enhancing the metadata FAIRness, while also benefiting the Federated EGA (FEGA) initiative, by providing to emerging nodes an out-of-the-box workflow for metadata validation.
The EGA aims to establish a process for constant review and incorporation of feedback into its model through collaboration with ELIXIR Human Data Communities.
Related Results
Big Metadata, Smart Metadata, and Metadata Capital: Toward Greater Synergy Between Data Science and Metadata
Big Metadata, Smart Metadata, and Metadata Capital: Toward Greater Synergy Between Data Science and Metadata
Abstract
Purpose
The purpose of the paper is to provide a framework for addressing the disconnect between metadata and data scie...
FAIR Digital Objects in Official Statistics
FAIR Digital Objects in Official Statistics
Introduction*1
Statistical offices on national and international scale provide statistics on demography, labour, income, society, economy, environment and othe...
Literature Review on Metadata Governance
Literature Review on Metadata Governance
The framework of metadata governance is a subset of the primary data governance framework implementation within an enterprise. Metadata management helps identify data provenance an...
Metadata quality and interoperability of GLAM digital images
Metadata quality and interoperability of GLAM digital images
PurposeThis study aims to explore how metadata have been applied in GLAM (galleries, libraries, archives and museums) institutions in New Zealand (NZ) and to analyse its overall qu...
Interoperability in Digital Healthcare: Enhancing Consumer Health and Transforming Care Systems
Interoperability in Digital Healthcare: Enhancing Consumer Health and Transforming Care Systems
Background: Interoperability is a central pillar of digital healthcare transformation that enables the smooth transfer of healthcare information, care coordination, and the perform...
Globally Findable Planetary Data: The Interdisciplinary TRR170-DB Repository
Globally Findable Planetary Data: The Interdisciplinary TRR170-DB Repository
Introduction: The TRR170-DB data repository (https://planetary-data-portal.org/) manages the research data from the collaborative research center ‘Late Accretion onto Ter...
P183 NEW METHOD OF ESOPHAGO-GASTRO ANASTOMOSIS WITHIN MINIMALLY INVASIVE HYBRID IVOR LEWIS PROCEDURE
P183 NEW METHOD OF ESOPHAGO-GASTRO ANASTOMOSIS WITHIN MINIMALLY INVASIVE HYBRID IVOR LEWIS PROCEDURE
Abstract
Aim
Improve the results of surgical treatment of esophageal cancer by developing and implementing a new method for the ...

