Javascript must be enabled to continue!
Whole genome de-novo assembly and annotation protocol for Apostichopus japonicus genome v1
View through CrossRef
This protocol is for the whole genome de novo assembly and annotation for apostichopus japonicus genome, but can be useful in other marine invertebrate genomes. It accompanies the following GigaScience publication: Jihoon Jo, et al. (2016): Draft genome of the sea cucumber Apostichopus japonicus and genetic polymorphism among color variants. GigaScience...
Springer Science and Business Media LLC
Title: Whole genome de-novo assembly and annotation protocol for Apostichopus japonicus genome v1
Description:
This protocol is for the whole genome de novo assembly and annotation for apostichopus japonicus genome, but can be useful in other marine invertebrate genomes.
It accompanies the following GigaScience publication: Jihoon Jo, et al.
(2016): Draft genome of the sea cucumber Apostichopus japonicus and genetic polymorphism among color variants.
GigaScience.
Related Results
The Annotation of De Novo Genome Assembly of the Silkworm, Bombyx mori Linn., Strain Nang Tui as Thai reference genome
The Annotation of De Novo Genome Assembly of the Silkworm, Bombyx mori Linn., Strain Nang Tui as Thai reference genome
Thailand is one of the most famous silk production regions, where silkworms (Bombyx mori Linn.) have been reared for sericulture for a long time. Thai silk holds the cultural impor...
Efficacy and Safety of Subcutaneous Prophylaxis with Concizumab in Patients with Hemophilia a or B with Inhibitors: Results from explorer4, a Phase 2, Randomized, Open-Label, Controlled Trial
Efficacy and Safety of Subcutaneous Prophylaxis with Concizumab in Patients with Hemophilia a or B with Inhibitors: Results from explorer4, a Phase 2, Randomized, Open-Label, Controlled Trial
Introduction Concizumab is an anti-tissue factor pathway inhibitor (TFPI) monoclonal antibody in clinical development for the subcutaneous prophylactic treatment of hemophilia pati...
Genome‐Wide Association Studies of Polysaccharides, Collagen, and Saponin Traits in the Sea Cucumber Apostichopus japonicus
Genome‐Wide Association Studies of Polysaccharides, Collagen, and Saponin Traits in the Sea Cucumber Apostichopus japonicus
Apostichopus japonicus is a commercially important marine species known for its high nutritional value and a range of bioactive compounds, including polysaccharides, collagen, and ...
An extensible genome annotation workbench based on the Galaxy Platform
An extensible genome annotation workbench based on the Galaxy Platform
Introduction
Falling costs of genetic sequencing have allowed sequencing and annotation of the genomes of non-model organism. In annotating non-mod...
Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images
Identification of hybrids between the Japanese giant salamander (Andrias japonicus) and Chinese giant salamander (Andrias cf. davidianus) using deep learning and smartphone images
AbstractHuman‐mediated hybridization between native and non‐native species is causing biodiversity loss worldwide. Hybridization has contributed to the extinction of many species t...
Hybran: Hybrid Reference Transfer and ab initio Prokaryotic Genome Annotation
Hybran: Hybrid Reference Transfer and ab initio Prokaryotic Genome Annotation
Abstract
De novo assembly has become commonplace for microbial organisms, increasing the demand for reliable genome annotation. Ab initio annotation is not an ideal...
Benchmarking Hayai-Annotation Plants: A Re-evaluation Using Standard Evaluation Metrics
Benchmarking Hayai-Annotation Plants: A Re-evaluation Using Standard Evaluation Metrics
Abstract
The rapid growth of next-generation sequencing (NGS) technology has led to a surge in the determination of whole genome sequences in pla...
A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing
A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing
A high-quality reference genome is a fundamental resource for functional genetics, comparative genomics, and population genomics, and is increasingly important for conservation bio...

