Javascript must be enabled to continue!
Comparison of Machine-Learning and Classical Force Fields in Simulating the Solvation of Small Organic Molecules in Acetonitrile
View through CrossRef
Machine learning force fields (MLFFs) have emerged as a new method for molecular simulation that combines the accuracy of ab initio approaches with the computational efficiency of classical force fields. However, the performance of MLFFs in describing the solvation configuration has yet to be explored. Here, we compare and contrast the performance of ANI-1ccx MLFF, the GAFF classical force field, and the ab initio molecular dynamics (AIMD) in simulating nine organic solutes in acetonitrile solvents. We examine the solvent-solute interaction described by these methods from four aspects: the solute conformation landscape, the solvation shell structure, the structure and dynamics of the O-H⋯N hydrogen bond, and the dynamics of the first solvation shell. For solute conformation description, ANI-1ccx and GAFF both yield minima that agree with density functional theory optimization for rigid solutes. However, their results diverge for flexible solutes. For solvation shell structure description, ANI-1ccx agrees better with AIMD on the location of the first solvent shell than GAFF does. For the description of the O-H⋯N hydrogen bond formed between acetonitrile and the solute, ANI-1ccx generates stronger hydrogen bonds with shorter bond lengths, wider bond angles, and longer hydrogen bond lifetimes, agreeing better with DFT-optimized structure. ANI-1ccx also describes a more frequent exchange of acetonitrile molecules in and out of the first solvation shell than GAFF. Our study demonstrates the potential benefits of utilizing MLFF for simulating solution-phase dynamics and generating solvation configurations.
Title: Comparison of Machine-Learning and Classical Force Fields in Simulating the Solvation of Small Organic Molecules in Acetonitrile
Description:
Machine learning force fields (MLFFs) have emerged as a new method for molecular simulation that combines the accuracy of ab initio approaches with the computational efficiency of classical force fields.
However, the performance of MLFFs in describing the solvation configuration has yet to be explored.
Here, we compare and contrast the performance of ANI-1ccx MLFF, the GAFF classical force field, and the ab initio molecular dynamics (AIMD) in simulating nine organic solutes in acetonitrile solvents.
We examine the solvent-solute interaction described by these methods from four aspects: the solute conformation landscape, the solvation shell structure, the structure and dynamics of the O-H⋯N hydrogen bond, and the dynamics of the first solvation shell.
For solute conformation description, ANI-1ccx and GAFF both yield minima that agree with density functional theory optimization for rigid solutes.
However, their results diverge for flexible solutes.
For solvation shell structure description, ANI-1ccx agrees better with AIMD on the location of the first solvent shell than GAFF does.
For the description of the O-H⋯N hydrogen bond formed between acetonitrile and the solute, ANI-1ccx generates stronger hydrogen bonds with shorter bond lengths, wider bond angles, and longer hydrogen bond lifetimes, agreeing better with DFT-optimized structure.
ANI-1ccx also describes a more frequent exchange of acetonitrile molecules in and out of the first solvation shell than GAFF.
Our study demonstrates the potential benefits of utilizing MLFF for simulating solution-phase dynamics and generating solvation configurations.
Related Results
Adiabatic and Non-Adiabatic Effects in Solvation Dynamics
Adiabatic and Non-Adiabatic Effects in Solvation Dynamics
The solvation process may in principle involve more then one adiabatic state. This is referred to as non adiabatic solvation. Adiabatic solvation proceeds on a single electronic po...
Acetonitrile [MAK Value Documentation, 2018]
Acetonitrile [MAK Value Documentation, 2018]
Abstract
The German Commission for the Investigation of Health Hazards of Chemical Compounds in the Work Area has re‐evaluated the maximum concentration at t...
Integrating quantum neural networks with machine learning algorithms for optimizing healthcare diagnostics and treatment outcomes
Integrating quantum neural networks with machine learning algorithms for optimizing healthcare diagnostics and treatment outcomes
The rapid advancements in artificial intelligence (AI) and quantum computing have catalyzed an unprecedented shift in the methodologies utilized for healthcare diagnostics and trea...
An Approach to Machine Learning
An Approach to Machine Learning
The process of automatically recognising significant patterns within large amounts of data is called "machine learning." Throughout the last couple of decades, it has evolved into ...
Machine Learning Guided Approach for Studying Solvation Environments
Machine Learning Guided Approach for Studying Solvation Environments
Toward practical modeling of local solvation effects of any solute in any solvent, we report a static and all-quantum mechanics based cluster-continuum approach for calculating sin...
Using radiocarbon to identify the impact of climate and mineralogy on soil organic matter turnover
Using radiocarbon to identify the impact of climate and mineralogy on soil organic matter turnover
Soils are the largest carbon (C) reservoir in terrestrial ecosystems. There are still numerous uncertainties concerning the fate of soil organic carbon and its feedback on climate ...
Advanced frameworks for fraud detection leveraging quantum machine learning and data science in fintech ecosystems
Advanced frameworks for fraud detection leveraging quantum machine learning and data science in fintech ecosystems
The rapid expansion of the fintech sector has brought with it an increasing demand for robust and sophisticated fraud detection systems capable of managing large volumes of financi...
Initial Experience with Pediatrics Online Learning for Nonclinical Medical Students During the COVID-19 Pandemic
Initial Experience with Pediatrics Online Learning for Nonclinical Medical Students During the COVID-19 Pandemic
Abstract
Background: To minimize the risk of infection during the COVID-19 pandemic, the learning mode of universities in China has been adjusted, and the online learning o...

