Genetic diversity and conservation insights for the baobab Adansonia suarezensis in northern Madagascar: a whole genome SNP analysis

Abstract Madagascar is home to seven unique baobab species in the genus Adansonia , all threatened by climate change, habitat destruction, and deforestation. Previous studies have highlighted the vulnerability of baobabs, particularly A. suarezensis , without delving into the specific genetic structure of its populations. In this paper we examine the genetic structure, diversity, and connectivity of seven populations of A. suarezensis , using genome-wide Single Nucleotide Polymorphism (SNP) data. The results revealed significant genetic differentiation between inland and coastal populations, with the Mahory population forming a distinct genetic cluster characterized by high heterozygosity but low polymorphism, indicative of historical bottlenecks. In contrast, northern populations showed greater admixture and gene flow but higher inbreeding coefficients in coastal regions, such as Ambilo and Cap d’Ambre, suggesting localized inbreeding depression. Additionally, historical climatic shifts and potential anthropogenic dispersal are explored as contributing factors to the current genetic patterns. This study highlights the importance of understanding genetic dynamics for conservation, emphasizing habitat restoration and targeted management strategies to preserve the evolutionary potential of A. suarezensis and ensure its long-term survival.