Search engine for discovering works of Art, research articles, and books related to Art and Culture
Javascript must be enabled to continue!
Asc-Seurat – Analytical single-cell Seurat-based web application
View through CrossRef
Abstract
Summary
Single-cell RNA sequencing (scRNA-seq) has become a popular approach for studying the transcriptome, providing a powerful tool for discovering and characterizing cell types and their developmental trajectories. However, scRNA-seq analysis is complex, requiring a continuous, iterative process to refine the data processing and uncover relevant biological information. We present Asc-Seurat, a feature rich workbench, providing a user-friendly and easy-to-install web application encapsulating the necessary tools for an all-encompassing and fluid scRNA-seq data analysis.
Availability and implementation
Asc-Seurat is available at
https://github.com/KirstLab/asc_seurat/
and released under GNU 3 license.
Contact
mkirst@ufl.edu
Supplementary information
Supplementary data are available at
Bioinformatics
online.
Title: Asc-Seurat – Analytical single-cell Seurat-based web application
Description:
Abstract
Summary
Single-cell RNA sequencing (scRNA-seq) has become a popular approach for studying the transcriptome, providing a powerful tool for discovering and characterizing cell types and their developmental trajectories.
However, scRNA-seq analysis is complex, requiring a continuous, iterative process to refine the data processing and uncover relevant biological information.
We present Asc-Seurat, a feature rich workbench, providing a user-friendly and easy-to-install web application encapsulating the necessary tools for an all-encompassing and fluid scRNA-seq data analysis.
Availability and implementation
Asc-Seurat is available at
https://github.
com/KirstLab/asc_seurat/
and released under GNU 3 license.
Contact
mkirst@ufl.
edu
Supplementary information
Supplementary data are available at
Bioinformatics
online.
Related Results
MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing v1
MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing v1
Human tissues comprise trillions of cells that populate a complex space of molecular phenotypes and functions and that vary in abundance by 4–9 orders of magnitude. Relying solely ...
Atypical squamous cells of undetermined significance cervical cytology in Bahrain: Reporting rates, high-risk HPV testing, and cytologic and histopathologic follow-up findings
Atypical squamous cells of undetermined significance cervical cytology in Bahrain: Reporting rates, high-risk HPV testing, and cytologic and histopathologic follow-up findings
Objective:
Atypical squamous cells of undetermined significance cytology (ASC-US) is a challenging and equivocal diagnosis for pathologists in cervical Pap smears. The data on ASC-...
Asc-Seurat: analytical single-cell Seurat-based web application
Asc-Seurat: analytical single-cell Seurat-based web application
Abstract
Background
Single-cell RNA sequencing (scRNA-seq) has revolutionized the study of transcriptomes, arising as a powerful tool for discoverin...
Adipose-Derived Stem Cells from Systemic Sclerosis Patients Maintain Pro-Angiogenic and Antifibrotic Paracrine Effects In Vitro
Adipose-Derived Stem Cells from Systemic Sclerosis Patients Maintain Pro-Angiogenic and Antifibrotic Paracrine Effects In Vitro
Innovative therapies based on autologous adipose-derived stem/stromal cells (ASC) are currently being evaluated for treatment of systemic sclerosis (SSc). Although paracrine angiog...
Protocol paper Aging & Autism Geurts ea
Protocol paper Aging & Autism Geurts ea
Autism spectrum conditions (ASC) develop early in life and are thought to last a lifetime. However, ASC research has two major knowledge gaps that hinder progression in understandi...
Discrimination sensitivity of visual shapes sharpens in autistic adults but only after explicit category learning
Discrimination sensitivity of visual shapes sharpens in autistic adults but only after explicit category learning
Abstract
Background
Categorization and categorical perception (i.e., enhanced discrimination across the category boundary) are essential processes to organize information ...
Monitoramento sérico de vancomicina: um estudo descritivo sobre a antibioticoterapia guiada em pacientes adultos
Monitoramento sérico de vancomicina: um estudo descritivo sobre a antibioticoterapia guiada em pacientes adultos
Introdução: A monitorização terapêutica de medicamentos é descrita como especialidade clínica multidisciplinar que busca aprimorar a assistência prestada ao paciente, devido ao aju...
Abstract 121: Ponatinib Promotes Endothelial Cell Inflammation And Leukocyte Trafficking Via Tumor Necrosis Factor Signaling: A Potential Mechanism Of Vascular Toxicity
Abstract 121: Ponatinib Promotes Endothelial Cell Inflammation And Leukocyte Trafficking Via Tumor Necrosis Factor Signaling: A Potential Mechanism Of Vascular Toxicity
Background:
ABL tyrosine kinase inhibitors (TKI) have dramatically improved chronic myeloid leukemia (CML) survival. Due to resistance to the first ABL-TKI imatinib (Im...