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A Novel Defined Pyroptosis-Related Gene Signature For Predicting the Prognosis of Prostate Cancer
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Abstract
Background: Pyroptosis can not only inhibit the occurrence and development of tumors but also develop a microenvironment conducive to cancer growth. However, pyroptosis research in prostate cancer (PCa) has rarely been reported.Methods: The expression profile and corresponding clinical data were obtained from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. Patients were divided into different clusters using consensus clustering analysis, and differential genes were obtained. We developed and validated a prognostic signature for biochemical recurrence (BCR) of PCa using univariate Cox analysis, LASSO-COX analysis, Kaplan-Meier (K-M) survival analysis, and time-dependent receiver operating characteristics (ROC) curves.Results: The expression levels of most pyroptosis-related genes (PRGs) are different not only between normal and tumor tissues but also between different clusters. Cluster2 patients have a better prognosis than cluster1 patients, and there are significant differences in immune cell content and biological pathway between them. Based on the classification of different clusters, we constructed an eight genes signature that can independently predict the progression-free survival (PFS) rate of a patient, and this signature was validated using a GEO data set (GSE70769). Finally, we established a nomogram model with good usability.Conclusions: In this study, PRGs were used as the starting point and based on the expression profile and clinical data, a prognostic signature with a high predictive value for biochemical recurrence (BCR) following radical prostatectomy (RP) was finally constructed, and the relationship between pyroptosis, immune microenvironment, and PCa was explored, providing important clues for future research on pyroptosis and immunity.
Research Square Platform LLC
Title: A Novel Defined Pyroptosis-Related Gene Signature For Predicting the Prognosis of Prostate Cancer
Description:
Abstract
Background: Pyroptosis can not only inhibit the occurrence and development of tumors but also develop a microenvironment conducive to cancer growth.
However, pyroptosis research in prostate cancer (PCa) has rarely been reported.
Methods: The expression profile and corresponding clinical data were obtained from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases.
Patients were divided into different clusters using consensus clustering analysis, and differential genes were obtained.
We developed and validated a prognostic signature for biochemical recurrence (BCR) of PCa using univariate Cox analysis, LASSO-COX analysis, Kaplan-Meier (K-M) survival analysis, and time-dependent receiver operating characteristics (ROC) curves.
Results: The expression levels of most pyroptosis-related genes (PRGs) are different not only between normal and tumor tissues but also between different clusters.
Cluster2 patients have a better prognosis than cluster1 patients, and there are significant differences in immune cell content and biological pathway between them.
Based on the classification of different clusters, we constructed an eight genes signature that can independently predict the progression-free survival (PFS) rate of a patient, and this signature was validated using a GEO data set (GSE70769).
Finally, we established a nomogram model with good usability.
Conclusions: In this study, PRGs were used as the starting point and based on the expression profile and clinical data, a prognostic signature with a high predictive value for biochemical recurrence (BCR) following radical prostatectomy (RP) was finally constructed, and the relationship between pyroptosis, immune microenvironment, and PCa was explored, providing important clues for future research on pyroptosis and immunity.
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