Javascript must be enabled to continue!
Hydrogen bond blueshifts in nitrile vibrational spectra are dictated by hydrogen bond geometry and dynamics
View through CrossRef
Vibrational Stark effect (VSE) spectroscopy has become one of the most important experimental approaches to determine the strength of noncovalent, electrostatic interactions in chemistry and biology and to quantify their influence on structure and reactivity. Nitriles (C≡N) have been widely used as VSE probes, but their application has been complicated by an anomalous hydrogen bond (HB) blueshift which is not encompassed within the VSE framework. We present an empirical model describing the anomalous HB blueshift in terms of H-bonding geometry, i.e. as a function of HB distance and angle with respect to the C≡N group. This model is obtained by comparing vibrational observables from density functional theory and electrostatics from the polarizable AMOEBA force field, and it provides a physical explanation for the HB blueshift in terms of underlying multipolar and Pauli repulsion contributions. Additionally, we compare predicted blueshifts with experimental results and find our model provides a useful, direct framework to analyze HB geometry for rigid HBs, such as within proteins or chemical frameworks. In contrast, nitriles in highly dynamic H-bonding environments like protic solvents are no longer a function solely of geometry; this is a consequence of motional narrowing, which we demonstrate by simulating IR spectra. Overall, when HB geometry and dynamics are accounted for, an excellent correlation is found between observed and predicted HB blueshifts. This correlation includes different types of nitriles and HB donors, suggesting that our model is general and can aid in understanding HB blueshifts wherever nitriles can be implemented.
Title: Hydrogen bond blueshifts in nitrile vibrational spectra are dictated by hydrogen bond geometry and dynamics
Description:
Vibrational Stark effect (VSE) spectroscopy has become one of the most important experimental approaches to determine the strength of noncovalent, electrostatic interactions in chemistry and biology and to quantify their influence on structure and reactivity.
Nitriles (C≡N) have been widely used as VSE probes, but their application has been complicated by an anomalous hydrogen bond (HB) blueshift which is not encompassed within the VSE framework.
We present an empirical model describing the anomalous HB blueshift in terms of H-bonding geometry, i.
e.
as a function of HB distance and angle with respect to the C≡N group.
This model is obtained by comparing vibrational observables from density functional theory and electrostatics from the polarizable AMOEBA force field, and it provides a physical explanation for the HB blueshift in terms of underlying multipolar and Pauli repulsion contributions.
Additionally, we compare predicted blueshifts with experimental results and find our model provides a useful, direct framework to analyze HB geometry for rigid HBs, such as within proteins or chemical frameworks.
In contrast, nitriles in highly dynamic H-bonding environments like protic solvents are no longer a function solely of geometry; this is a consequence of motional narrowing, which we demonstrate by simulating IR spectra.
Overall, when HB geometry and dynamics are accounted for, an excellent correlation is found between observed and predicted HB blueshifts.
This correlation includes different types of nitriles and HB donors, suggesting that our model is general and can aid in understanding HB blueshifts wherever nitriles can be implemented.
Related Results
Hydrogen bond donors in drug design
Hydrogen bond donors in drug design
In medicinal chemistry, hydrogen bond donors are seen to cause more problems than hydrogen bond acceptors and this study examines hydrogen bond donor-acceptor asymmetries in the co...
Molecular dynamics simulations of mechanical properties of swollen nitrile rubber composites by incorporating carbon nanotubes
Molecular dynamics simulations of mechanical properties of swollen nitrile rubber composites by incorporating carbon nanotubes
Abstract
Molecular models of pure and 10% and 20% swollen nitrile rubber matrices were developed. Different amounts of carbon nanotubes (CNTs) were incorporated i...
Nitrile glove composition and performance—Substandard properties and inaccurate packaging information
Nitrile glove composition and performance—Substandard properties and inaccurate packaging information
The durability and mechanical properties of synthetic medical gloves, such as those made from nitrile, vary drastically depending on the manufacturer. This study reports the chemic...
Influence of the Hydrogen Bonding Environment on Vibrational Coupling in the Electrical Double Layerat the Silica/Aqueous Interface
Influence of the Hydrogen Bonding Environment on Vibrational Coupling in the Electrical Double Layerat the Silica/Aqueous Interface
Vibrational spectroscopy is a powerful tool for determining the local hydrogen-bonding environment. However, vibrational coupling present in H2O can make it difficult to relate ...
Full vibrational spectra of some electronic states of NaLi molecule using a difference converging method
Full vibrational spectra of some electronic states of NaLi molecule using a difference converging method
For most diatomic electronic states, it is very difficult to obtain the accurate vibrational spectra of the highly-excited states directly by using the modern experimental techniqu...
Nitrilase gene detection and nitrile metabolism in two bacterial strains associated with waste streams in Lagos, Nigeria
Nitrilase gene detection and nitrile metabolism in two bacterial strains associated with waste streams in Lagos, Nigeria
Abstract
Background
The use of nitrile compounds is usually high, particularly in chemical industries, which calls for serious concern because of th...
Vibrational Bruise Prediction of Harvested Kiwifruits under Transportation based on the BP Neural Network
Vibrational Bruise Prediction of Harvested Kiwifruits under Transportation based on the BP Neural Network
<p>Vibrational bruise is one of the most common mechanical damages of fruit under transportation. Transportation vibrational bruise prediction can provide important theoretic...
Infrared Hide-and-Seek: Vibrational Excitons Conceal Surfactants at the Air/Water Interface
Infrared Hide-and-Seek: Vibrational Excitons Conceal Surfactants at the Air/Water Interface
Surface-sensitive vibrational spectroscopy is a common tool for measuring molecular organization and intermolecular interactions at interfaces. Peak intensity ratios are typically ...

